Spartak Moskva
(26)Torpedo
(23)FK Anzhi
(22)FK Rostov
(20)Khimki
(19)Kuban Krasnodar
(19)Tom Tomsk
(19)Spartak Nalchik
(18)Baltika Kaliningrad
(17)Krylya Sovetov
(16)CSKA Moskva
(15)Dynamo Moskva
(15)Akhmat Grozny
(13)FK Krasnodar
(13)Rubin Kazan
(13)Saturn
(13)Volga Nizhny Novgorod
(13)Luch Vladivostok
(12)Fakel Voronezh
(11)SKA-Energia
(11)Shinnik
(11)FK Nizhny Novgorod (2007)
(10)Rotor Volgograd
(9)Chernomorets Novorossiysk
(8)FK Orenburg
(8)SKA Rostov
(8)Sibir
(8)Spartak Vladikavkaz
(8)Volga Tver
(8)Amkar
(7)Arsenal Tula
(7)FC Soyuz
(7)FK Moskva
(7)Kamaz
(7)Mordovia Saransk
(7)Zvezda Irkutsk
(7)FK Zhenys
(6)Avangard Kursk
(6)Dynamo Briansk
(6)Volgar Astrakhan
(6)Zenit
(6)Ararat Moskva
(5)Dynamo Barnaul
(5)Dynamo St Petersburg
(5)FC Yenisey
(5)FK Armavir
(5)Neftekhimik Nizhnekamsk
(5)Nosta Novotroitsk
(5)Olimp-Dolgoprudny
(5)Sokol Saratov
(5)Ulisses FC
(4)Dinamo Minsk
(4)Dynamo Stavropol
(4)FK Nika Moskva
(4)Lada Togliatti
(4)Lokomotiv Nizhny Novgorod
(4)Torpedo ZIL
(4)Tosno
(4)Tyumen
(4)Uralan
(4)Vityaz Podolsk
(4)Zenit Penza
(4)Dnipro
(4)Belshina
(3)Gomel
(3)Vetra
(3)BSC Kristall
(3)Druzhba
(3)Dynamo Makhachkala
(3)FC Reutov
(3)FK Istra
(3)FK Ryazan [1995]
(3)FK Ural
(3)MVD Rossii
(3)Mashuk-KMV
(3)Tambov
(3)Volga Ulyanovsk
(3)Arsenal Kyiv
(3)Dynamo Kyiv
(3)Nice
(2)ADO Den Haag
(2)FC Twente
(2)PSV
(2)FC Slavia-Mozyr
(2)Torpedo Zhodino
(2)Dinamo Tbilisi
(2)Atyrau
(2)Irtysh
(2)Tobol
(2)FK Riga
(2)Sheriff
(2)FC Sportacademclub
(2)Metallurg Lipetsk
(2)Oryol
(2)Salyut Belgorod
(2)Tekstilshchik Kamyshin
(2)Borysfen
(2)Metalist
(2)Qizilqum PFK
(2)